Stem-loop mdm-MIR395i

Accession

MI0023092

Description

Malus domestica mdm-MIR395i precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention mdm-MIR395i
(49 sentences)

Sequence

ucaggugucaccaagaGUUCCCUUGACCACUUCAUUGggaaauagucucuuuugcaacuaaauauccuaCUGAAGUGUUUGGGGGAACUCccggcggcauuuga
(((((((((.((..((((((((((((.(((((((.(((((..((((..(....)..))))....))))).))))))).))))))))))))..)).)))))))))

Structure

         a  aa            C       U     --aa    cu u 
ucagguguc cc  gaGUUCCCUUGA CACUUCA UGgga    uagu  c u
||||||||| ||  |||||||||||| ||||||| |||||    ||||  |  
aguuuacgg gg  CUCAAGGGGGUU GUGAAGU auccu    auca  g u
         c  cc            U       C     auaa    ac u 

Annotation confidence Not enough data

Genome context

MDC003768.152: 37677-37780 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR395i

Mature mdm-miR395i-3p

• Accession: MIMAT0025988
• Description: Malus domestica mdm-miR395i-3p mature miRNA
• Sequence: 70 - CUGAAGUGUUUGGGGGAACUC - 90
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR395i-5p

• Accession: MIMAT0037471
• Description: Malus domestica mdm-miR395i-5p mature miRNA
• Sequence: 17 - GUUCCCUUGACCACUUCAUUG - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812