miRBase entry: mdm-MIR396c

Stem-loop mdm-MIR396c


Accession
MI0023095
Description
Malus domestica mdm-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
8 open access papers mention mdm-MIR396c
(37 sentences)

Sequence

uugccaugcuuUUCCACAGCUUUCUUGAACUUcaauucucugcugucuaaaumucuuucaggacuagcaccauggaagcucaagaaagcugugggagaccauggcaa
.(((((((.(((((((((((((((((((.((((.......((((((((............)))).)))).....)))).))))))))))))))))))).))))))).

Structure
u       c                   A    aauucuc    -    aaaum 
 ugccaug uuUUCCACAGCUUUCUUGA CUUc       ugcu gucu     u
 ||||||| ||||||||||||||||||| ||||       |||| ||||      
 acgguac agagggugucgaaagaacu gaag       acga cagg     c
a       c                   c    --guacc    u    acuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC003523.387: 23887-23993 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR396c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR396c

Accession MIMAT0025991
Description Malus domestica mdm-miR396c mature miRNA
Sequence 12 - UUCCACAGCUUUCUUGAACUU - 32
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47