Stem-loop mdm-MIR396f

Accession

MI0023098

Description

Malus domestica mdm-MIR396f precursor miRNA

Literature search

8 open access papers mention mdm-MIR396f
(38 sentences)

Sequence

460837 reads, 20482.0 reads per million, 32 experiments

gugcacauacagaugauccucccuguaauuUUCCACGGCUUUCUUGAACUGugcaguuuccagaagaauuaaacuggcagaaauuuuucaugcagauacaaaaacagUUCAAGAAAGCUGUGAAAAAccaccggcaggaucugaguuguucau
(((.(((.((..(.((((((.((.((..((((.(((((((((((((((((((.((((((...........))))))((((((....))).)))..........))))))))))))))))))).))))..)).)).)))))))..))))).)))

Structure

   c   u  ag u      c  u  aa    C                   --------------------------g      ccag 
gug aca ac  a gauccu cc gu  uuUU CACGGCUUUCUUGAACUGu                           caguuu    a
||| ||| ||  | |||||| || ||  |||| |||||||||||||||||||                           ||||||    a
uac ugu ug  u cuagga gg ca  AAAA GUGUCGAAAGAACUUgaca                           gucaaa    g
   u   -  ag -      c  c  cc    A                   aaaacauagacguacuuuuuaaagacg      uuaa 

Annotation confidence High

Genome context

MDC001261.116: 9150-9302 [+]

Mature mdm-miR396f-5p

• Accession: MIMAT0025994
• Description: Malus domestica mdm-miR396f-5p mature miRNA
• Sequence: 31 - UUCCACGGCUUUCUUGAACUG - 51
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396f-3p

• Accession: MIMAT0056672
• Description: Malus domestica mdm-miR396f-3p mature miRNA
• Sequence: 108 - UUCAAGAAAGCUGUGAAAAA - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47