miRBase entry: mdm-MIR408a

Stem-loop mdm-MIR408a


Accession
MI0023117
Description
Malus domestica mdm-MIR408a precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
4 open access papers mention mdm-MIR408a
(17 sentences)

Sequence

ggaaagagaguuaauaagacagggaagagguagagcauggauggaguucucaagagcaaaauagagcucuugugacucuacucAUGCACUGCCUCUUCCCUGGCuuugccucccucuccuucc
((((.(((((.....(((.((((((((((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))))))))))).))).......))))).))))

Structure
    a     --uuaau   a              a      a       cu       aaa 
ggaa gagag       aag cagggaagagguag gcaugg uggaguu  caagagc   a
|||| |||||       ||| |||||||||||||| |||||| |||||||  |||||||    
ccuu cucuc       uuC GUCCCUUCUCCGUC CGUAcu aucucag  guucucg   u
    c     ccuccgu   G              A      c       -u       aga 


Annotation confidence Not enough data
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Genome context
MDC006505.260: 3714-3836 [-]

Database links

Mature mdm-miR408a

Accession MIMAT0026013
Description Malus domestica mdm-miR408a mature miRNA
Sequence 84 - AUGCACUGCCUCUUCCCUGGC - 104
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47