Stem-loop mdm-MIR159c

Accession

MI0023157

Description

Malus domestica mdm-MIR159c precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

11 open access papers mention mdm-MIR159c
(73 sentences)

Sequence

ggagcuccuuuugauucaaaagcaggagggagagaggguuuuacacugcugcugguucauggaugccccugaggugcgcacgauaaggaaacugcgcagcuuaaggguuugcauggcccaggagauguGAAUUCCUUCUCCUCUCCUUUcuuggauugaagggagcucc
(((((((((((((((((((.((.(((((((.(((((((..((.(((..((.((((.(((((.(.((((.((((.((((((............)))))).)))).)))).).))))).)))).))..)))))..)))))))))))))))).)))))))))))))))))))

Structure

                   a  c       a       uu  a   ug  g    u     g u    c    g      cgaua 
ggagcuccuuuugauucaa ag aggaggg gagaggg  uu cac  cu cugg ucaug a gccc ugag ugcgca     a
||||||||||||||||||| || ||||||| |||||||  || |||  || |||| ||||| | |||| |||| ||||||      
ccucgagggaaguuagguu UU UCCUCUC CUCUUCC  AA Gug  ga gacc gguac u uggg auuc acgcgu     g
                   c  -       -       UU  -   ua  g    c     g u    a    g      caaag 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdm-miR159c

• Accession: MIMAT0026053
• Description: Malus domestica mdm-miR159c mature miRNA
• Sequence: 129 - GAAUUCCUUCUCCUCUCCUUU - 149
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47