Stem-loop mdm-MIR169f

Accession

MI0023172

Description

Malus domestica mdm-MIR169f precursor miRNA

Literature search

4 open access papers mention mdm-MIR169f
(9 sentences)

Sequence

999 reads, 276.0 reads per million, 32 experiments

gaguguauaacaugaagagaagagcguuguuuggUAGCCAAGGAUGACUUGCCUGcukccucuccuaauucuaauccaauccaauccaagaggaguccuacguuguuggguuucccagcagcaggcaccagGCAGGUCUCCUUUGGCUAACUUGacagccucuucuucucaugcuauacccuu
(((.(((((.(((((.((((((((.((((((.(((((((((((..((((((((((...((((((((........................)))))......(((((((((...))))))))))))...))))))))))..)))))))).))).)))))))))))))).))))).))))).)))

Structure

   u     a     a        c      u   -        AU          cuk   cuccuaauucuaauccaauccaauccaagaggaguccuac         u 
gag guaua cauga gagaagag guuguu ggU AGCCAAGG  GACUUGCCUG   ccu                                        guuguuggg  
||| ||||| ||||| |||||||| |||||| ||| ||||||||  ||||||||||   |||                                        ||||||||| u
uuc cauau guacu uucuucuc cgacaG UCA UCGGUUUC  CUGGACGgac   gga                                        cgacgaccc  
   c     c     c        -      U   A        CU          cac   ----------------------------------------         u 

Annotation confidence High

Genome context

MDC001494.456: 32862-33044 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR169f

Mature mdm-miR169f-5p

• Accession: MIMAT0026068
• Description: Malus domestica mdm-miR169f-5p mature miRNA
• Sequence: 35 - UAGCCAAGGAUGACUUGCCUG - 55
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR169f-3p

• Accession: MIMAT0056735
• Description: Malus domestica mdm-miR169f-3p mature miRNA
• Sequence: 132 - GCAGGUCUCCUUUGGCUAACUUG - 154
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47