Stem-loop bma-mir-5872

Accession

MI0023474

Description

Brugia malayi bma-mir-5872 precursor miRNA

Sequence

acgacaucauguggucgauuugaggguaugggugaguauacuccucauacugUUUCAGGAGGUGAACCAGCAgcgauaguag
...(((((.((((((((.((((((((((((((.(((....)))))))))))..))))))...)).)))).))..))).))..

Structure

acg  -   -a  -    -  --a      --        u   u 
   ac auc  ug uggu cg   uuugag  gguauggg gag a
   || |||  || |||| ||   ||||||  |||||||| |||  
   ug uag  AC ACCA GU   GGACUU  ucauacuc cuc u
-ga  a   cg  G    A  GGA      Ug        -   a 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1763: 2550-2631 [+]

Mature bma-miR-5872

• Accession: MIMAT0026371
• Description: Brugia malayi bma-miR-5872 mature miRNA
• Sequence: 53 - UUUCAGGAGGUGAACCAGCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4