Stem-loop sequence mtr-MIR399t

Accession

MI0025232 (change log)

Description

Medicago truncatula miR399t stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399t
(22 sentences)

Stem-loop

   --     uu    ua a   ug   u    a         a  uagu     ---u     a     
5'   ugcag  gaau  c ggg  agu cucc uuggcaggu gc    cacua    augau ugca 
     |||||  ||||  | |||  ||| |||| ||||||||| ||    |||||    ||||| ||| u
3'   acguc  cuua  g ccc  uua gagg aaccgucua cg    gugau    uacua acgu 
   ca     cu    gc a   gu   -    a         a  ---u     ucuu     -     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 24156521-24156643 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR399t

• mtr-MIR399g: chr8: 23158805-23158908 [-]
• mtr-MIR399f: chr8: 23166508-23166611 [-]
• mtr-MIR399f: chr8: 23986801-23986904 [+]
• mtr-MIR399g: chr8: 23994507-23994610 [+]
• mtr-MIR399f: chr8: 24153821-24153924 [+]
• mtr-MIR399t: chr8: 24156521-24156643 [+]
• mtr-MIR399g: chr8: 24161515-24161618 [+]
• mtr-MIR399f: chr8: 24222878-24222981 [+]
• mtr-MIR399g: chr8: 24230599-24230702 [+]

Database links

• miRBase Tracker:MI0025232

Mature sequence mtr-miR399t-5p

• Accession: MIMAT0030005
• Sequence: 16 - gggugaguucuccauuggcaggu - 38
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR399t-3p

• Accession: MIMAT0030006
• Sequence: 88 - ugccaaaggagauuugcccag - 108
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).