Stem-loop bdi-MIR7730

Accession

MI0025346

Description

Brachypodium distachyon bdi-MIR7730 precursor miRNA

Sequence

cucgcgcauccaaauggacAGAACAGCCACGGUUGAAAGUUAUgggaguuaauggaggacauaaugauaggaguaauuaacgguaguauaaacagucugugaaagcagaagaggcuuuucgguccgggaauugauuacggucuaauacgauugguagaucuggaauuuuuuuaaaaccuagaacgaccuauagaagggggcgggagucggaagugaugaguccaccacuacuauuuuacuagcuuguauguuuucuuucuccacugauccauuauacucccuacuucccauuuuauaggucgaucuagguuauauuuuuuaccccgauucaccugucuuauuagucuguaaucaauucccugaucaaaaaaccucuccgucuuucaugaagaccguuuacacucccacaauuuuagccuuucacuaauuccuucguuaagccacguAACUUUCUCCCGCAGCUGUUCUGUccuucgggau
.......((((....((((((((((((..(((..((((((((((((..(((((((((((..((.(((.(((...((((...((.(((.(((((.(((((((((((..(.(((((.((((.((((.(((((((((((((((.((((((.(((.(((.((((.((........((.((((((((.(((((((((((((((((.((((((.(((((((..(((......(((((..............))).)).....)))..))))..))).....))))))...))))).)))))))))))).)))))))).))........)).)))).))).))).)))))).))))))))))))))).)))).)))).))))).)..)))))))..)))).))))).)))))...))))....))).))).))..))))))))))).)).))))))))))..)))..))))))))))))....))))

Structure

cucgcgc    aaau            CA   UU          -  ag           ca  a   u   -agu    aac  u   a     a    --       ca a     c    c    c               u      c   u   a    u  aauuuuuu  a        a            -     --c      ----c   --    au   uccacc  -   uauuuu 
       aucc    ggacAGAACAGC  CGG  GAAAGUUAUg gg  uuaauggagga  ua uga agg    aauu   gg agu uaaac gucu  gugaaag  g agagg uuuu gguc gggaauugauuacgg cuaaua gau ggu gauc gg        ua aaccuaga cgaccuauagaa ggggg   gggagu     gga  agug  gag      ac uac      a
       ||||    ||||||||||||  |||  |||||||||| ||  |||||||||||  || ||| |||    ||||   || ||| ||||| ||||  |||||||  | ||||| |||| |||| ||||||||||||||| |||||| ||| ||| |||| ||        || |||||||| |||||||||||| |||||   ||||||     |||  ||||  |||      || |||       
       uagg    ccUGUCUUGUCG  GCC  CUUUCAAugc cc  aauugcuuccu  au acu ucc    uuaa   cc uca auuug caga  uacuuuc  c ucucc aaaa cuag cccuuaacuaauguc gauuau cug cca uuag cc        au uuggaucu gcuggauauuuu cccuu   cccuca     ccu  ucac  cuu      ug aug      c
-------    gcuu            AC   CU          a  -g           ua  c   u   gauu    cac  -   c     c    ag       ug c     a    a    u               u      u   u   c    c  cauuuuuu  a        a            a     cau      uauua   ag    cu   -ucuuu  u   uucgau 

Annotation confidence Not enough data

Genome context

2: 50019627-50020106 [-]

Mature bdi-miR7730-5p

• Accession: MIMAT0030194
• Description: Brachypodium distachyon bdi-miR7730-5p mature miRNA
• Sequence: 20 - AGAACAGCCACGGUUGAAAGUUAU - 43
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7730-3p

• Accession: MIMAT0030195
• Description: Brachypodium distachyon bdi-miR7730-3p mature miRNA
• Sequence: 447 - AACUUUCUCCCGCAGCUGUUCUGU - 470
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443