Stem-loop prd-mir-239

Accession

MI0025552

Description

Panagrellus redivivus prd-mir-239 precursor miRNA

Sequence

AUUGUACUCUCCAAGGUUUUCUGauuuauuggaacucAGAAGCUUGGUGCAGUACAAAGG
.((((((((.(((((..((((((((((....))).)))))))))))).).)))))))...

Structure

--A       - U     GU       -   a 
   UUGUACU C CCAAG  UUUCUGa uuu u
   ||||||| | |||||  ||||||| |||  
   AACAUGA G GGUUC  GAAGAcu aag u
GGA       C U     --       c   g 

Annotation confidence Not enough data

Genome context

KB455521.1: 89576-89635 [-]

Mature prd-miR-239-5p

• Accession: MIMAT0030462
• Description: Panagrellus redivivus prd-miR-239-5p mature miRNA
• Sequence: 1 - AUUGUACUCUCCAAGGUUUUCUG - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-239-3p

• Accession: MIMAT0030463
• Description: Panagrellus redivivus prd-miR-239-3p mature miRNA
• Sequence: 38 - AGAAGCUUGGUGCAGUACAAAGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295