Stem-loop stu-MIR171a

Accession

MI0025936

Description

Solanum tuberosum stu-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

8 open access papers mention stu-MIR171a
(39 sentences)

Sequence

UAUUGGCCUGGUUCACUCAGAcaacaaaaugaaacuauauuuaaaugguggaguuucuguuuuccguuUGAUUGAGCCGUGCCAAUAUC
(((((((.(((((((.((((((...(((..((((((.((((.....)))).))))))..)))...)))))).))))))).)))))))..

Structure

--       C       C      aac   au      a    u 
  UAUUGGC UGGUUCA UCAGAc   aaa  gaaacu uauu a
  ||||||| ||||||| ||||||   |||  |||||| |||| a
  AUAACCG GCCGAGU AGUuug   uuu  cuuuga gugg a
CU       U       U      ccu   gu      g    u 

Annotation confidence Not enough data

Genome context

JH137810.1: 1766224-1766312 [+]

Mature stu-miR171a-5p

• Accession: MIMAT0031256
• Description: Solanum tuberosum stu-miR171a-5p mature miRNA
• Sequence: 1 - UAUUGGCCUGGUUCACUCAGA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR171a-3p

• Accession: MIMAT0031257
• Description: Solanum tuberosum stu-miR171a-3p mature miRNA
• Sequence: 69 - UGAUUGAGCCGUGCCAAUAUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233