Stem-loop stu-MIR399i

Accession

MI0025938

Description

Solanum tuberosum stu-MIR399i precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399i
(12 sentences)

Sequence

GGGCUACACUCUAUUGGCAUGcagcuuuuuugguggcucuaaguagcaauuugaucaaauauuugagcugauaUGCCAAAGGAGAGUUGCCCUA
((((.((.((((.((((((((((((((......(((.((.((((....))))))))).......)))))).)))))))).)))).)).))))..

Structure

--    U  A    A        -      -uuuugg   c  u    a 
  GGGC AC CUCU UUGGCAUG cagcuu       ugg uc aagu g
  |||| || |||| |||||||| ||||||       ||| || ||||  
  CCCG UG GAGG AACCGUau gucgag       acu ag uuua c
AU    U  A    A        a      uuuauaa   -  -    a 

Annotation confidence Not enough data

Genome context

JH138739.1: 10330-10423 [+]

Mature stu-miR399i-5p

• Accession: MIMAT0031260
• Description: Solanum tuberosum stu-miR399i-5p mature miRNA
• Sequence: 1 - GGGCUACACUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399i-3p

• Accession: MIMAT0031261
• Description: Solanum tuberosum stu-miR399i-3p mature miRNA
• Sequence: 74 - UGCCAAAGGAGAGUUGCCCUA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233