Stem-loop stu-MIR827

Accession

MI0025949

Description

Solanum tuberosum stu-MIR827 precursor miRNA

Literature search

2 open access papers mention stu-MIR827
(4 sentences)

Sequence

UUUGUUGAUGGUCAUCUAUUCaucauaucauuuggcauaguuuuugcaaccauuaauaugccaugaUUAGAUGAACAUCAACAAACA
((((((((((.(((((((.(((..........(((((((.((..((....))..)))))))))))).))))))).))))))))))..

Structure

--          G       U   ucauaucauu       g  uu  c 
  UUUGUUGAUG UCAUCUA UCa          uggcaua uu  ug a
  |||||||||| ||||||| |||          ||||||| ||  ||  
  AAACAACUAC AGUAGAU agu          accguau aa  ac a
AC          A       U   ----------       -  uu  c 

Annotation confidence Low

Genome context

JH137826.1: 454124-454210 [-]

Mature stu-miR827-5p

• Accession: MIMAT0031272
• Description: Solanum tuberosum stu-miR827-5p mature miRNA
• Sequence: 1 - UUUGUUGAUGGUCAUCUAUUC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR827-3p

• Accession: MIMAT0031273
• Description: Solanum tuberosum stu-miR827-3p mature miRNA
• Sequence: 67 - UUAGAUGAACAUCAACAAACA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233