Stem-loop sequence stu-MIR172e

Accession

MI0025961 (change log)

Description

Solanum tuberosum miR172e stem-loop

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172e
(50 sentences)

Stem-loop

   --   a              a   ---a   u   -            --------     aa  aaa 
5'   gca caucaucaagauuc cau    aaa aga aauaauguggag        uagaa  aa   u
     ||| |||||||||||||| |||    ||| ||| ||||||||||||        |||||  ||    
3'   cgu guaguaguucuaag gua    uuu uuu uuauuauaccuc        aucuu  uu   a
   ua   c              a   aaag   u   a            uguauuaa     cg  gaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138154.1: 115358-115481 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025961

Mature sequence stu-miR172e-5p

• Accession: MIMAT0031294
• Sequence: 1 - gcaacaucaucaagauucaca - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR172e-3p

• Accession: MIMAT0031295
• Sequence: 104 - agaaucuugaugaugcugcau - 124
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).