Stem-loop stu-MIR408a

Accession

MI0025985

Description

Solanum tuberosum stu-MIR408a precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

5 open access papers mention stu-MIR408a
(12 sentences)

Sequence

ACAGGGACGAGGCAGCGCAUGagauguacaauuuuacuaguugcccauuccaUGCACAGCCUCUUCCCUGGUU
.((((((.(((((.(.(((((.((((..(((((.....)))))..)))).))))).).))))).))))))...

Structure

--A      C     A C     a    ua     u 
   CAGGGA GAGGC G GCAUG gaug  caauu u
   |||||| ||||| | ||||| ||||  ||||| a
   GUCCCU CUCCG C CGUac uuac  guuga c
UUG      U     A A     c    cc     u 

Annotation confidence Not enough data

Genome context

JH138061.1: 680411-680483 [+]

Mature stu-miR408a-5p

• Accession: MIMAT0031337
• Description: Solanum tuberosum stu-miR408a-5p mature miRNA
• Sequence: 1 - ACAGGGACGAGGCAGCGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR408a-3p

• Accession: MIMAT0031338
• Description: Solanum tuberosum stu-miR408a-3p mature miRNA
• Sequence: 53 - UGCACAGCCUCUUCCCUGGUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233