miRBase entry: stu-MIR169b

Stem-loop stu-MIR169b


Accession
MI0025998
Description
Solanum tuberosum stu-MIR169b precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
5 open access papers mention stu-MIR169b
(7 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUgcaucauuaguucuugagguuugugauauaucauguauaugccauguauacaagcauucuucuuugauggccagGCAGUCUCCUUGGCUACU
((((((((((.((((.(((((..(((((((.....((((((((((((((..(((....)))..)))).))))))).)))....))))))).)))))))))))))))))))..

Structure
--          U    U     ca       uucuu   -       -    au   g 
  UAGCCAAGGA GACU GCCUg  ucauuag     gag guuugug auau  cau u
  |||||||||| |||| |||||  |||||||     ||| ||||||| ||||  |||  
  AUCGGUUCCU CUGA CGgac  gguaguu     cuu cgaacau ugua  gua a
UC          -    -     -c       -ucuu   a       a    cc   u 


Annotation confidence Not enough data
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Genome context
JH137832.1: 2204840-2204951 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR169b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR169b-5p

Accession MIMAT0031361
Description Solanum tuberosum stu-miR169b-5p mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCU - 20
Evidence experimental
Illumina [1]

Mature stu-miR169b-3p

Accession MIMAT0031362
Description Solanum tuberosum stu-miR169b-3p mature miRNA
Sequence 95 - GCAGUCUCCUUGGCUACU - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233