Stem-loop stu-MIR169e

Accession

MI0026001

Description

Solanum tuberosum stu-MIR169e precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention stu-MIR169e
(6 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUacuccauuugauaauauuuuuuauuugguuguagGCAAGUUAUCCUGGCUAUC
((((((.(((((((((((((((.(((..(((.........)))..)))..)))))))))))))))))))))..

Structure

--      A               -u   uu   uaa 
  UAGCCA GGAUGACUUGCCUac  cca  uga   u
  |||||| |||||||||||||||  |||  |||   a
  AUCGGU CCUAUUGAACGgaug  ggu  auu   u
CU      -               uu   uu   uuu 

Annotation confidence Not enough data

Genome context

JH138085.1: 297829-297901 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from stu-MIR169e

Mature stu-miR169e-5p

• Accession: MIMAT0031367
• Description: Solanum tuberosum stu-miR169e-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR169e-3p

• Accession: MIMAT0031368
• Description: Solanum tuberosum stu-miR169e-3p mature miRNA
• Sequence: 55 - GCAAGUUAUCCUGGCUAUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233