miRBase entry: stu-MIR169g

Stem-loop stu-MIR169g


Accession
MI0026003
Description
Solanum tuberosum stu-MIR169g precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention stu-MIR169g
(6 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUacauaauacuaccaauuucaagcugaaaugcuacuuguuugguugacauguuaggcagucaucuauggcuuug
.(((((.((((((((.((((((((......(((((.....(((......)))......)))))....))).))))))))))))).)))))...

Structure
--U     A        U     -   aauacu     -uuuca   ug 
   AGCCA GGAUGACU GCCUa cau      accaa      agc  a
   ||||| |||||||| ||||| |||      |||||      |||   
   ucggu ucuacuga cggau gua      ugguu      ucg  a
guu     a        -     u   --cagu     uguuca   ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH138318.1: 159255-159347 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR169g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR169g

Accession MIMAT0031371
Description Solanum tuberosum stu-miR169g mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233