Stem-loop bma-mir-86

Accession

MI0026318

Description

Brugia malayi bma-mir-86 precursor miRNA

Gene family

MIPF0000247; mir-86

Sequence

ugaugcuaggugagcuggccaguUAAGUGAAUGCUUUGCCACAGUCUuagaaauugauuaagcugggcuaagguucacuuaggcuggacgcuauaaccgcagagcaaacaucccuuacucaugccugcaagugc
........(((.(((.(.((((((((((((((.(((.(((.(((.(((((.......))))))))))).)))))))))))).))))).))))...)))((((.(((...............)))))))......

Structure

----------------------------ugaugcua   --g   u g     -         G   U   A   U     aa 
                                    ggu   agc g ccagu UAAGUGAAU CUU GCC CAG CUuag  a
                                    |||   ||| | ||||| ||||||||| ||| ||| ||| |||||  u
                                    cca   ucg c ggucg auucacuug gaa cgg guc gaauu  u
cgugaacguccguacucauucccuacaaacgagacg   aua   - a     g         -   u   -   -     ag 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold38: 113611-113744 [-]

Mature bma-miR-86

• Accession: MIMAT0031762
• Description: Brugia malayi bma-miR-86 mature miRNA
• Sequence: 24 - UAAGUGAAUGCUUUGCCACAGUCU - 47
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498