miRBase entry: ppc-mir-8299

Stem-loop ppc-mir-8299


Accession
MI0026987
Description
Pristionchus pacificus ppc-mir-8299 precursor miRNA


Sequence

UAGUGUUUUAGUUGCGUACAAAcauucaucgguuuUGCACAUAAUUAAAGCACUACC
((((((((((((((.((.(((((........).)))).)).))))))))))))))..

Structure
--              C  A    - auu 
  UAGUGUUUUAGUUG GU CAAA c   c
  |||||||||||||| || |||| |    
  AUCACGAAAUUAAU CA GUuu g   a
CC              A  C    u gcu 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 226063-226119 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ppc-mir-8299
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8299-5p

Accession MIMAT0033115
Description Pristionchus pacificus ppc-miR-8299-5p mature miRNA
Sequence 1 - UAGUGUUUUAGUUGCGUACAAA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8299-3p

Accession MIMAT0033116
Description Pristionchus pacificus ppc-miR-8299-3p mature miRNA
Sequence 36 - UGCACAUAAUUAAAGCACUACC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260