miRBase entry: ppc-mir-8300

Stem-loop ppc-mir-8300


Accession
MI0026988
Description
Pristionchus pacificus ppc-mir-8300 precursor miRNA


Sequence

UCCAGUAGUGUCGUGAACCAAAugcagccacauaaucauuuuUGGUUAGCGACAUUGCUGGUGC
.(((((((((((((.(((((((..................))))))).)))))))))))))...

Structure
--U             G       ugcagcca 
   CCAGUAGUGUCGU AACCAAA        c
   ||||||||||||| |||||||         
   GGUCGUUACAGCG UUGGUuu        a
CGU             A       uuacuaau 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 238228-238291 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ppc-mir-8300
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8300-5p

Accession MIMAT0033117
Description Pristionchus pacificus ppc-miR-8300-5p mature miRNA
Sequence 1 - UCCAGUAGUGUCGUGAACCAAA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8300-3p

Accession MIMAT0033118
Description Pristionchus pacificus ppc-miR-8300-3p mature miRNA
Sequence 43 - UGGUUAGCGACAUUGCUGGUGC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260