Stem-loop pxy-mir-8497

Accession

MI0027300

Description

Plutella xylostella pxy-mir-8497 precursor miRNA

Literature search

1 open access papers mention pxy-mir-8497
(1 sentences)

Sequence

49 reads, 2253 reads per million, 4 experiments

acagaguguugcaauagugguauacuaaggcccuguuucacaugguuaguggcuaccuguuaGAUAAAAUGCAUGAUGUCACUGUcaaaaaaauuauaacagagagugacagcauguauuuuaucuuacacguagcuacuaaccagauauagugaaacaggggcuaaguccaaaggggguuacucaau
...(((((.(.(.....(((...(((.((.(((((((((((.((((((((((((((.(((.((((((((((((((.(((((((.((...............)).))))))).)))))))))))))).))).))))))))))))))......))))))))))).)).))))))....).).)))))...

Structure

aca     u g aauag   uau   a  g           -----a              c   u              A       G  aaaaaa 
   gagug u c     ugg   acu ag cccuguuucac      ugguuaguggcuac ugu aGAUAAAAUGCAUG UGUCACU Uc      a
   ||||| | |     |||   ||| || |||||||||||      |||||||||||||| ||| |||||||||||||| ||||||| ||      u
   cucau g g     acc   uga uc gggacaaagug      accaaucaucgaug aca ucuauuuuauguac acaguga ag      u
uaa     u g -ggaa   ---   a  g           auauag              c   u              g       g  acaaua 

Annotation confidence Not enough data

Genome context

scaffold_244: 76387-76574 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-8497

Mature pxy-miR-8497

• Accession: MIMAT0033707
• Description: Plutella xylostella pxy-miR-8497 mature miRNA
• Sequence: 63 - GAUAAAAUGCAUGAUGUCACUGU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787