Stem-loop sequence pxy-mir-10

Accession

MI0027386 (change log)

Description

Plutella xylostella miR-10 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

3 open access papers mention pxy-mir-10
(4 sentences)

Stem-loop

   uagcaucaaauauua    c      cu   -  g    u           ugaa 
5'                gugc cuacau  acc cu uaga ccgaauuuguu    g
                  |||| ||||||  ||| || |||| |||||||||||    u
3'                cacg ggugug  ugg ga aucu ggcuuaaacag    g
   --------------g    u      uu   a  g    u           cgga 

Deep sequencing

1480 reads, 3.84e+04 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_121: 165252-165349 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0027386

Mature sequence pxy-miR-10-5p

• Accession: MIMAT0033793
• Sequence: 28 - uacccuguagauccgaauuugu - 49
• Deep sequencing: 451 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence pxy-miR-10-3p

• Accession: MIMAT0033794
• Sequence: 65 - aaauucgguucuagagagguuu - 86
• Deep sequencing: 1028 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).