miRBase entry: pxy-mir-10

Stem-loop pxy-mir-10


Accession
MI0027386
Description
Plutella xylostella pxy-mir-10 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention pxy-mir-10
(4 sentences)

Sequence

296 reads, 11778 reads per million, 4 experiments
uagcaucaaauauuagugcccuacaucUACCCUGUAGAUCCGAAUUUGUuugaagugaggcgacAAAUUCGGUUCUAGAGAGGUUUguguggugcacg
...............((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).

Structure
uagcaucaaauauua    c      cU   -  G    U           ugaa 
               gugc cuacau  ACC CU UAGA CCGAAUUUGUu    g
               |||| ||||||  ||| || |||| |||||||||||    u
               cacg ggugug  UGG GA AUCU GGCUUAAAcag    g
--------------g    u      UU   A  G    U           cgga 


Annotation confidence Not enough data
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Genome context
scaffold_121: 165252-165349 [-]

Database links

Mature pxy-miR-10-5p

Accession MIMAT0033793
Description Plutella xylostella pxy-miR-10-5p mature miRNA
Sequence 28 - UACCCUGUAGAUCCGAAUUUGU - 49
Evidence experimental
Illumina [1]

Mature pxy-miR-10-3p

Accession MIMAT0033794
Description Plutella xylostella pxy-miR-10-3p mature miRNA
Sequence 65 - AAAUUCGGUUCUAGAGAGGUUU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787