Stem-loop sequence pxy-mir-8510a-6

Accession

MI0027413 (change log)

Description

Plutella xylostella miR-8510a-6 stem-loop

Gene family

MIPF0001886; mir-8510

Stem-loop

   ug     g     a    g        c  a   -  g 
5'   uucuc ucgau cugu aucucacc gc agu cg u
     ||||| ||||| |||| |||||||| || ||| ||  
3'   gaggg aguua gaua uagagugg cg uca gu c
   ag     a     c    g        a  c   c  g 

Deep sequencing

308 reads, 8.05e+03 reads per million, 4 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (1.0)	Overlapping transcripts
scaffold_211: 758499-758575 [-]	intergenic
scaffold_858: 134-210 [+]	intergenic

Clustered miRNAs

< 10kb from pxy-mir-8510a-6

• pxy-mir-8510a-6: scaffold_211: 758499-758575 [-]
• pxy-mir-8510a-5: scaffold_211: 758017-758121 [-]
• pxy-mir-8510a-1: scaffold_211: 757646-757712 [-]
• pxy-mir-8510a-4: scaffold_211: 757068-757172 [-]
• pxy-mir-8510a-7: scaffold_211: 756073-756153 [-]
• pxy-mir-8510a-8: scaffold_211: 755257-755323 [-]
• pxy-mir-8510a-2: scaffold_211: 754738-754803 [-]
• pxy-mir-8510a-2: scaffold_211: 754182-754247 [-]

Database links

• miRBase Tracker:MI0027413

Mature sequence pxy-miR-8510a-5p

• Accession: MIMAT0033732
• Sequence: 14 - acugugaucucacccgcaagu - 34
• Deep sequencing: 472 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence pxy-miR-8510a-3p

• Accession: MIMAT0033733
• Sequence: 46 - ucgcaggugagaugauagcauu - 67
• Deep sequencing: 1715 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).