miRBase entry: atr-MIR8580

Stem-loop atr-MIR8580


Accession
MI0027465
Description
Amborella trichopoda atr-MIR8580 precursor miRNA


Sequence

111 reads, 72 reads per million, 2 experiments
uggaaaugagguugcgauauucuucaccauccauuuuacuuggacuguguagguuugaaucguuuuuuaagaccguuucaauggaugucacgucuuuuaagauaguguucaaucuacacUGUCUAAAUAGAAUGGAUGGUGUAggugacugcaaccuuauuucua
((((((((((((((((....(((.((((((((((((((.((((((.(((((((((.((((.(((((..(((((.((..((.....))..)))))))..)))))...))))))))))))).)))))).)))))))))))))).)))....))))))))))))))))

Structure
                auau   u              c      u         u    --c     uu     c  uu  a 
uggaaaugagguugcg    ucu caccauccauuuua uuggac guguagguu gaau   guuuu  aagac gu  ca u
||||||||||||||||    ||| |||||||||||||| |||||| ||||||||| ||||   |||||  ||||| ||  || g
aucuuuauuccaacgu    ggA GUGGUAGGUAAGAU AAUCUG cacaucuaa cuug   uagaa  uucug ca  gu g
                cagu   U              A      U         -    uga     uu     -  cu  a 


Annotation confidence High
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Genome context
scaffold00003: 1980853-1981017 [-]

Database links

Mature atr-miR8580

Accession MIMAT0033864
Description Amborella trichopoda atr-miR8580 mature miRNA
Sequence 120 - UGUCUAAAUAGAAUGGAUGGUGUA - 143
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089