Stem-loop atr-MIR164b

Accession

MI0027512

Description

Amborella trichopoda atr-MIR164b precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

2110 reads, 17231 reads per million, 4 experiments

ggugagugcaagagcccgugcggguggaugaaccccuguUGGAGAAGCAGGGCACGUGCAaacacacgugcuguccucuuugcacgugcuccccuucuccaacauggguuucacaccucucucucucucuacu
((((((.(..((((.......(((((...((((((.(((((((((((..(((((((((((((...((.....))....)))))))))))))..))))))))))).))))))..)))))))))..).))).)))

Structure

   -   u ca    cccgugc     gau      c           CA             -cac  g 
ggu gag g  agag       gggug   gaaccc uguUGGAGAAG  GGGCACGUGCAaa    ac u
||| ||| |  ||||       |||||   |||||| |||||||||||  |||||||||||||    || g
uca cuc c  ucuc       uccac   uuuggg acaaccucuuc  cucgugcacguuu    ug c
   u   u uc    -------     -ac      u           cc             cucc  u 

Annotation confidence Not enough data

Genome context

scaffold00045: 3520956-3521088 [-]

Mature atr-miR164b

• Accession: MIMAT0033914
• Description: Amborella trichopoda atr-miR164b mature miRNA
• Sequence: 40 - UGGAGAAGCAGGGCACGUGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089