miRBase entry: atr-MIR396a

Stem-loop atr-MIR396a


Accession
MI0027535
Description
Amborella trichopoda atr-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

1533 reads, 862 reads per million, 4 experiments
ggaacauggaagauuugaucuuuuccaugcucUCCACAGGCUUUCUUGAACAUgcugcucaaacccgucuucugccauguucuuggagaagcaaaguugagugacaaguuuaagaaugccuggggaaaacauggaaaugaauuacaaggucggucacaaugcauauucc
((((.(((.(.((((.(((((((((((((...(((.(((((.(((((((((.((.(((((((....(.(((((.(((......)))))))))....))))))).)).))))))))).))))).)))...))))))).........))))))))))....).))).))))

Structure
    c   g ---a    u      ---------       cuc   A     U         A  c       accc u     g   ug 
ggaa aug a    gauu gaucuu         uuccaug   UCC CAGGC UUCUUGAAC Ug ugcucaa    g cuucu cca  u
|||| ||| |    |||| ||||||         |||||||   ||| ||||| ||||||||| || |||||||    | ||||| |||   
ccuu uac u    cugg cuggaa         aagguac   agg guccg aagaauuug ac gugaguu    c gaaga ggu  u
    a   g aaca    -      cauuaagua       aaa   g     u         a  a       gaaa -     -   uc 


Annotation confidence Not enough data
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Genome context
scaffold00013: 1544499-1544667 [+]

Database links

Mature atr-miR396a

Accession MIMAT0033938
Description Amborella trichopoda atr-miR396a mature miRNA
Sequence 33 - UCCACAGGCUUUCUUGAACAU - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089