Stem-loop sly-MIR9470

Accession

MI0029103

Description

Solanum lycopersicum sly-MIR9470 precursor miRNA

Sequence

ucacccaaaaugucacacuacuaaaugguaaagaaagacagucacccaagaaaguuuaggaaaaguugcuaggugggcaaagguaaccuugaaaaugcgagcugcaccaacaggauuguccuccgucauacauuggcgaauuggggggcUGAAAUCCAUGAGCCUAAACUauagcccucgccuuuggcaugguugcauacaaauauuguggugauaagguccaacucaauuuucuauuuucccaaucacgugcacacaaaaaccaagcuggcucuaguuauuuaaugacacacagugaguggaguucaagagagggcuacagUUUGGCUCAUGGAUUUUAGCaaaccauuucuccauguuugucagacgacaauacuguuggaccaacuugcauuuucgggaucaccuuuguccggcaagcaaccuuuucugaaacuugcuuaggugauuuucuucuucccuguauguaguggaacauuuuugcuga
(((.(.(((((((..((((((.....((..(((((.((.(((((((.(((.((((((.((((((((((((.(.(((((((((((...((((((((((((((.((..(((((((..(((((.((.(.((.((((.((.(((.(((...(((((((((((((((((.(((((.((((((((..(((.(((.(((((((((((((...)))).(((((..((.....................))..)))))))))).......)))).)))(((((((.(((((...........))))).))))))).))).)))))))).))))))))))))))))))))))...))).))).)))))).)).).)).)))))..)))))))..)).))))))))))))))...))))))))))).).))))).))))))).)))))).))).))))))).))))))).)).....))))))..))))))).).)))

Structure

   c c       ca      uaaau  ua     a  c       c   a      a       -     a g           aac              c  ca       ga     c  c u  u    u  c   u   ggg                 U     a        gc   -------------------------------------u   a    -------     acaaauauuguggugauaaggucc 
uca c aaaaugu  cacuac     gg  aagaa ga agucacc aag aaguuu ggaaaag uugcu g ugggcaaaggu   cuugaaaaugcgag ug  ccaacag  uuguc uc g ca acau gg gaa ugg   gcUGAAAUCCAUGAGCC AAACU uagcccuc  cuu                                      ggc uggu       ugcau                        a
||| | |||||||  ||||||     ||  ||||| || ||||||| ||| |||||| ||||||| ||||| | |||||||||||   |||||||||||||| ||  |||||||  ||||| || | || |||| || ||| |||   ||||||||||||||||| ||||| ||||||||  |||                                      ||| ||||       |||||                        a
agu g uuuuaca  gugaug     cc  uucuu cu uuagugg uuc uucaaa ucuuuuc aacga c gccuguuucca   gggcuuuuacguuc ac  gguuguc  aacag ag c gu ugua cc cuu acc   CGAUUUUAGGUACUCGG UUUga aucgggag  gaa                                      ucg acca       acgug                        c
   c u       ag      uaugu  -c     -  u       a   g      g       c     a g           cua              a  ca       au     c  a u  u    -  u   u   aaa                 -     c        -a   cuugaggugagugacacacaguaauuuauugaucucgg   a    aaaacac     cacuaacccuuuuaucuuuuaacu 

Annotation confidence Not enough data

Genome context

chr8: 393508-393994 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR9470

Mature sly-miR9470-5p

• Accession: MIMAT0035439
• Description: Solanum lycopersicum sly-miR9470-5p mature miRNA
• Sequence: 150 - UGAAAUCCAUGAGCCUAAACU - 170
• Evidence: experimental ; Illumina [1]

Mature sly-miR9470-3p

• Accession: MIMAT0035440
• Description: Solanum lycopersicum sly-miR9470-3p mature miRNA
• Sequence: 323 - UUUGGCUCAUGGAUUUUAGC - 342
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739