Accession
MI0029104
Description
Solanum lycopersicum
sly-MIR9471b precursor miRNA
Gene family
MIPF0002045;
MIR9471
Literature search
3 open access papers mention sly-MIR9471b
(3 sentences)
(3 sentences)
Sequence
gaaaugauuuugugaaaaaaaauuggaucuuugacugauuugggguuuugagauucaguugauuucuGAGGUGCUCACUCAGCUAAUAguuauuguuuaagaaacucaauaauauuggcagcaaggagaauggugacuuucaggaugauaacuaUUGGCUGAGUGAGCAUCACUGaaaucgacaugauucugagaggaaaaugacugauugaaagauguauuuauuaaaaaaauuguuuu
(((((((((((.........(((((((((((.((((.......))))..)))))))))))((((((.(.(((((((((((((((((((((((((((((..((((.(((......(((....))).........))).)))).))))))))))))))))))))))))))))).).)))))).((((..(((....((........))....)))..))))..........)))))))))))
(((((((((((.........(((((((((((.((((.......))))..)))))))))))((((((.(.(((((((((((((((((((((((((((((..((((.(((......(((....))).........))).)))).))))))))))))))))))))))))))))).).)))))).((((..(((....((........))....)))..))))..........)))))))))))
Structure
gugaaaaaaaauuggaucuuugacugauuugggguuuugagauucaguu u A aa c ---auaaua g
gaaaugauuuu gauuuc G GGUGCUCACUCAGCUAAUAguuauuguuu gaaa uca uug c
||||||||||| |||||| | ||||||||||||||||||||||||||||| |||| ||| |||
uuuuguuaaaa cuaaaG C CUACGAGUGAGUCGGUUaucaauaguagg cuuu agu aac a
aaauuauuuauguagaaaguuagucaguaaaaggagagucuuaguacag U A -a c gguaagagg g
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr12: 1979337-1979576 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR9471b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature sly-miR9471b-5p
| Accession | MIMAT0035441 |
| Description | Solanum lycopersicum sly-miR9471b-5p mature miRNA |
| Sequence | 68 - GAGGUGCUCACUCAGCUAAUA - 88 |
| Evidence |
experimental
Illumina [1] |
Mature sly-miR9471b-3p
| Accession | MIMAT0035442 |
| Description | Solanum lycopersicum sly-miR9471b-3p mature miRNA |
| Sequence | 155 - UUGGCUGAGUGAGCAUCACUG - 175 |
| Evidence |
experimental
Illumina [1] |
References
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