Stem-loop sequence sly-MIR166c

Accession

MI0029105 (change log)

Description

Solanum lycopersicum miR166c stem-loop

Gene family

MIPF0000004; MIR166

Literature search

25 open access papers mention sly-MIR166c
(91 sentences)

Stem-loop

   u   --u    ---uga              uu      cu    a aa       auuguauguauuuaguuauucguuaucaagauugauguc 
5'  gug   gugg      guuugagggggaug  gucugg  cgac c  uuacucu                                       g
    |||   ||||      ||||||||||||||  ||||||  |||| |  |||||||                                       a
3'  cau   cauc      caaacucuccuuac  cggacc  gcug g  aaugagg                                       u
   a   uuu    uuauaa              uu      ag    c ga       gaaaaauguagaacauauauacacaaauuaaauaagcaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr1: 92621085-92621272 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007AA03A_4081
• miRBase Tracker:MI0029105

Mature sequence sly-miR166c-5p

• Accession: MIMAT0035443
• Sequence: 21 - gggauguugucuggcucgaca - 41
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR166c-3p

• Accession: MIMAT0035444
• Sequence: 145 - ucggaccaggcuucauuccuc - 165
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).