Accession
MI0029106
Description
Solanum lycopersicum
sly-MIR5302b precursor miRNA
Gene family
MIPF0001975;
MIR5302
Literature search
3 open access papers mention sly-MIR5302b
(4 sentences)
(4 sentences)
Sequence
aagcauuuucagcaaaaUGAAAUGCUAUAGUUGGAAAGUucuaaacauuucggaugauaguuccaaaguaacaaaucucguuugaaugucucuugaucaacuuuuauauauauauauauauauauauccaaacgagguuuguuacuuuggaauaucuuucgaaaucugaaaaacUUUUCAACUAUAGCAUUAUUUUuugcggaaaauuuguuu
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((((((((((((((((((((((...(((....))).......(((((((((....)))))))))..)))))))))))))))))))))))))))).))))))))......))))))))))))))))))))...)))))).)))))..)))))
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((((((((((((((((((((((...(((....))).......(((((((((....)))))))))..)))))))))))))))))))))))))))).))))))))......))))))))))))))))))))...)))))).)))))..)))))
Structure
-- a UGA cuaaac u g aaugucucuugaucaacuuu a
aagca uuuuc gcaaaa AAUGCUAUAGUUGGAAAGUu auuucgga gaua uuccaaaguaacaaaucucguuug uauauauau u
||||| ||||| |||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
uuugu aaaag cguuUU UUACGAUAUCAACUUUUcaa uaaagcuu cuau aagguuucauuguuuggagcaaac auauauaua a
uu g UUA aaaguc u - ------------------cu u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr7: 4228975-4229187 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR5302b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature sly-miR5302b-5p
| Accession | MIMAT0035445 |
| Description | Solanum lycopersicum sly-miR5302b-5p mature miRNA |
| Sequence | 18 - UGAAAUGCUAUAGUUGGAAAGU - 39 |
| Evidence |
experimental
Illumina [1] |
Mature sly-miR5302b-3p
| Accession | MIMAT0035446 |
| Description | Solanum lycopersicum sly-miR5302b-3p mature miRNA |
| Sequence | 175 - UUUUCAACUAUAGCAUUAUUUU - 196 |
| Evidence |
experimental
Illumina [1] |
References
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