Stem-loop sly-MIR156e

Accession

MI0029110

Description

Solanum lycopersicum sly-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

32 open access papers mention sly-MIR156e
(168 sentences)

Sequence

ugguggUGAUAGAAGAGAGUGAGCACacaugguguuuucuugcaugauguuuauauauauauaugcuugaaacuauguguGCUUACUCUCUAUCUGUCACCccca
(((.(((((((((((((((((((((((((((((...(((..(((((((((......)))).)))))..))))))))))))))))))))))).))))))))).)))

Structure

   u         -                    guu   uu     -    uu 
ugg ggUGAUAGA AGAGAGUGAGCACacauggu   uuc  gcaug augu  a
||| ||||||||| ||||||||||||||||||||   |||  ||||| ||||   
acc CCACUGUCU UCUCUCAUUCGuguguauca   aag  cguau uaua  u
   c         A                    ---   uu     a    ua 

Annotation confidence Not enough data

Genome context

chr8: 51945235-51945339 [-]

Mature sly-miR156e-5p

• Accession: MIMAT0035453
• Description: Solanum lycopersicum sly-miR156e-5p mature miRNA
• Sequence: 7 - UGAUAGAAGAGAGUGAGCAC - 26
• Evidence: experimental ; Illumina [1]

Mature sly-miR156e-3p

• Accession: MIMAT0035454
• Description: Solanum lycopersicum sly-miR156e-3p mature miRNA
• Sequence: 81 - GCUUACUCUCUAUCUGUCACC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739