Stem-loop sly-MIR167b

Accession

MI0029112

Description

Solanum lycopersicum sly-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

24 open access papers mention sly-MIR167b
(168 sentences)

Sequence

ucucacuucuguauguugguuuuuugagagguUAAAGCUGCCAGCAUGAUCUGGuaagaacaaaauccuauuauauuucaucuauauuuucuuauaaaaagaagaaaugaauuuaaauuugaauuuuuuguaaaaaaaaaauguugagguuuuuaauuuccuucuuuuggauuugaaaaaaagaaaauuaaauuuuuguaaggauuuuauuucuuugaagaaaauauagauagauagcuuugguuccaucAGGUCAUCUAGCAGCUUCAAUcacucaccaacaauacacacaaagga
.........(((((((((((.....(((.((((.(((((((.((.((((((((((..((((..((..(((((.......((((((((((((((...((((((((((((......((((((.(((.((((........)))).))).))))))...)))).))))))))...........(((((((...(((((((....)))))))..))))))).)))))))))))))).)))))..)).)))).)))))))))))).))))))).)))).))))))))).))))).........

Structure

ucucacuuc     -      uuuuu   a    A       C  C          aa    aa  uc     auauuuc              ----------------------------------------------aua        -    gaauuu      g   u    gua 
         uguau guuggu     gag gguU AAGCUGC AG AUGAUCUGGu  gaac  aa  cuauu       aucuauauuuucuu                                                 aaaagaag aaau      aaauuu aau uuuu   a
         ||||| ||||||     ||| |||| ||||||| || ||||||||||  ||||  ||  |||||       ||||||||||||||                                                 |||||||| ||||      |||||| ||| ||||    
         acaua caacca     cuc cUAA UUCGACG UC UACUGGAcua  cuug  uu  gauag       uagauauaaaagaa                                                 uuuucuuc uuua      uuugga uug aaaa   a
aggaaacac     a      -----   a    C       A  -          -c    -g  uc     ------a              guuucuuuauuuuaggaauguuuuuaaauuaaaagaaaaaaaguuuagg        c    ---auu      g   u    aaa 

Annotation confidence Not enough data

Genome context

chr2: 38817780-38818076 [-]

Mature sly-miR167b-5p

• Accession: MIMAT0035457
• Description: Solanum lycopersicum sly-miR167b-5p mature miRNA
• Sequence: 33 - UAAAGCUGCCAGCAUGAUCUGG - 54
• Evidence: experimental ; Illumina [1]

Mature sly-miR167b-3p

• Accession: MIMAT0035458
• Description: Solanum lycopersicum sly-miR167b-3p mature miRNA
• Sequence: 251 - AGGUCAUCUAGCAGCUUCAAU - 271
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739