Stem-loop sly-MIR169e

Accession

MI0029121

Description

Solanum lycopersicum sly-MIR169e precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

16 open access papers mention sly-MIR169e
(47 sentences)

Sequence

aggaggagaggccuuacaugaauuagaagaguuucuauuuguuuagUAGCCAAGGAUGACUUGCCUUUcaucaaugccuuuuguaaaauggaaauugauuacaacacuuucuaugguauugggaaaaugagUGGCAAGCAUCUUUGGCGACUugacaaacucuucuuugucauguuaguccaucuucuuccu
.((((((((((.((.((((((...(((((((((......((((.(((.((((((((((.((((((.((((((((((((.........(((((((.((.......)).)))))))))))))).....))))).)))))))))))))))).))).)))))))))))))...)))))).)).)).))))))))..

Structure

-a        -  c  u      auu         ucuauu    u   A          A      U     -----       uuuuguaaa       u  au 
  ggaggaga gg cu acauga   agaagaguu      uguu agU GCCAAGGAUG CUUGCC UUcau     caaugcc         auggaaa ug  u
  |||||||| || || ||||||   |||||||||      |||| ||| |||||||||| |||||| |||||     |||||||         ||||||| ||  a
  cuucuucu cc ga uguacu   ucuucucaa      acag UCA CGGUUUCUAC GAACGG gagua     guuaugg         uaucuuu ac  c
uc        a  u  u      guu         ------    u   G          -      U     aaagg       ---------       c  aa 

Annotation confidence Not enough data

Genome context

chr8: 57585442-57585633 [+]

Mature sly-miR169e-5p

• Accession: MIMAT0035475
• Description: Solanum lycopersicum sly-miR169e-5p mature miRNA
• Sequence: 47 - UAGCCAAGGAUGACUUGCCUUU - 68
• Evidence: experimental ; Illumina [1]

Mature sly-miR169e-3p

• Accession: MIMAT0035476
• Description: Solanum lycopersicum sly-miR169e-3p mature miRNA
• Sequence: 132 - UGGCAAGCAUCUUUGGCGACU - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739