miRBase entry: bdi-MIR444d

Stem-loop bdi-MIR444d


Accession
MI0029167
Description
Brachypodium distachyon bdi-MIR444d precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
1 open access papers mention bdi-MIR444d
(3 sentences)

Sequence

gcaaguggaggcggcaagcuagaggcagcaacugcauaacgugcaagaaaaucguuucgggccauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcugccucccuuugc
(((((.((((((((((((((.(((((((((((((((((((.(((((((((((((..((((......))))))))))))))))).))))))))))))))))))).)))))))))))))).)))))

Structure
     u              a                   g             uu    gc 
gcaag ggaggcggcaagcu gaggcagcaacugcauaac ugcaagaaaaucg  ucgg  c
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||  ||||   
cguuu ccuccgucgUUCGA CUCUGUUGUUGACGUguug acguucuuuuagu  agcc  a
     c              A                   a             --    au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bdi-miR444d

Accession MIMAT0035525
Description Brachypodium distachyon bdi-miR444d mature miRNA
Sequence 89 - UGCAGUUGUUGUCUCAAGCUU - 109
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145