miRBase entry: dvi-mir-974-2

Stem-loop dvi-mir-974-2


Accession
MI0029291
Description
Drosophila virilis dvi-mir-974-2 precursor miRNA
Gene family
MIPF0002083; mir-974


Sequence

aacugggcauucccucuGAGCGAGCAGAGAAGUAUUAUUugcgugaaucugauaucaaaUAAGACUUUUUUGGUUCGCUAUGagguauuguucau
...((((((...((((..(((((((((((((((.(((((((.(((.......)))))))))).)))))))).)))))))..))))...)))))).

Structure
aac      uuc    uG       -        A       c   aa 
   ugggca   ccuc  AGCGAGC AGAGAAGU UUAUUug gug  u
   ||||||   ||||  ||||||| |||||||| ||||||| |||  c
   acuugu   ggaG  UCGCUUG UUUUUUCA AAUaaac uau  u
--u      uau    UA       G        G       -   ag 


Annotation confidence Not enough data
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Genome context
scaffold_13042: 917557-917651 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from dvi-mir-974-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-974-2-5p

Accession MIMAT0035645
Description Drosophila virilis dvi-miR-974-2-5p mature miRNA
Sequence 18 - GAGCGAGCAGAGAAGUAUUAUU - 39
Evidence experimental
Illumina [1-2]

Mature dvi-miR-974-3p

Accession MIMAT0035646
Description Drosophila virilis dvi-miR-974-3p mature miRNA
Sequence 60 - UAAGACUUUUUUGGUUCGCUAUG - 82
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250