Stem-loop bra-MIR9552a

Accession

MI0029296

Description

Brassica rapa bra-MIR9552a precursor miRNA

Gene family

MIPF0002123; MIR9552

Literature search

1 open access papers mention bra-MIR9552a
(1 sentences)

Sequence

uguuguugucagcagaCUAUCGGUCUACUCGGUCAGCgcuagcuucuucaucaccggacagacuaaucuaguggagaagcugcagaaguuuagccuguccggugaggaagaagcuagcgcUGACCAAGUAGACCGAUAGUCuacugacaacaacagcgucagccaacuucuuaaugucuucgaucgcagagucgaagaugucgccgaguguuuc
((((((((((((.((((((((((((((((.(((((((((((((((((((.(((((((((((.((((.((..((.((...)).))..)).)))).))))))))))).))))))))))))))))))).)))))))))))))))).))))))))))))((....))..((((....(((((((((((......)))))))))))....)))).....

Structure

-----------------------------------------------------------            c                C                   a           a    u  ag  g  a 
                                                           uguuguugucag agaCUAUCGGUCUACU GGUCAGCgcuagcuucuuc ucaccggacag cuaa cu  ug ag  
                                                           |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||  || || a
                                                           acaacaacaguc uCUGAUAGCCAGAUGA CCAGUcgcgaucgaagaag aguggccuguc gauu ga  ac uc  
cuuugugagccgcuguagaagcugagacgcuagcuucuguaauucuucaaccgacugcg            a                A                   g           c    u  ag  g  g 

Annotation confidence Not enough data

Genome context

chrA8: 9143909-9144122 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR9552a

Mature bra-miR9552a-5p

• Accession: MIMAT0035653
• Description: Brassica rapa bra-miR9552a-5p mature miRNA
• Sequence: 17 - CUAUCGGUCUACUCGGUCAGC - 37
• Evidence: experimental ; Illumina [1]

Mature bra-miR9552a-3p

• Accession: MIMAT0035654
• Description: Brassica rapa bra-miR9552a-3p mature miRNA
• Sequence: 121 - UGACCAAGUAGACCGAUAGUC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146