Stem-loop bra-MIR9408

Accession

MI0029298

Description

Brassica rapa bra-MIR9408 precursor miRNA

Gene family

MIPF0002027; MIR9408

Sequence

acaacgaguuuugcuuaagaCAACAGUCUCAGGAUGGAAAAugcuuuugacuuauguaaccgugaucaaaucucgcagccaaaacuaaguaaaaaguauuUUUCAUCUUAGAGAAUGUUGUUuugaaccaauuucgucca
...(((((.((.(.(((((((((((.((((((((((((((((((((((.(((((.((..(.((((.......)))).).....))))))).)))))))))))))))))).)))).))))))))))).).)).)))))...

Structure

aca     u  u c           G    -                  g     u  ---aa c    uc 
   acgag uu g uuaagaCAACA UCUC AGGAUGGAAAAugcuuuu acuua gu     c guga  a
   ||||| || | ||||||||||| |||| |||||||||||||||||| ||||| ||     | ||||  a
   ugcuu aa c aguuUUGUUGU AGAG UUCUACUUUuuaugaaaa ugaau ca     g cgcu  a
acc     u  c a           A    A                  a     -  aaacc a    cu 

Annotation confidence Not enough data

Genome context

chrA1: 9651914-9652053 [-]

Mature bra-miR9408-5p

• Accession: MIMAT0035657
• Description: Brassica rapa bra-miR9408-5p mature miRNA
• Sequence: 21 - CAACAGUCUCAGGAUGGAAAA - 41
• Evidence: experimental ; Illumina [1]

Mature bra-miR9408-3p

• Accession: MIMAT0035658
• Description: Brassica rapa bra-miR9408-3p mature miRNA
• Sequence: 101 - UUUCAUCUUAGAGAAUGUUGUU - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146