Stem-loop bra-MIR9555a

Accession

MI0029301

Description

Brassica rapa bra-MIR9555a precursor miRNA

Gene family

MIPF0002081; MIR9555

Sequence

uaaguucuuaaaauacauguauguauauguauauauuauauaugcguauguaauuaugggaUUCUAAGCUUUACGGGAAACCcaaccgaaaguuccuuaaauaagaaauuuucgauugcgUUUCCCGUAAAGCUUAGAACCccgcaauuaccaauuacauacgcauauauaauuuauaaauacacauacauauauuuuaagaaccua
...((((((((((((.((((((((.(((.((((.(((((((((((((((((((((.((((.((((((((((((((((((((.(((.((((((((.(((....))).)))))))).))).)))))))))))))))))))).))))........))))))))))))))))))))).)))).))).)))))))).))))))))))))...

Structure

uaa            c        a   g    u                     -------a    a                    C   c        c   a 
   guucuuaaaaua auguaugu uau uaua auuauauaugcguauguaauu        uggg UUCUAAGCUUUACGGGAAAC caa cgaaaguu cuu a
   |||||||||||| |||||||| ||| |||| |||||||||||||||||||||        |||| |||||||||||||||||||| ||| |||||||| |||  
   caagaauuuuau uacauaca aua auau uaauauauacgcauacauuaa        gccC AAGAUUCGAAAUGCCCUUUg guu gcuuuuaa gaa a
auc            a        c   a    u                     ccauuaac    C                    c   a        a   u 

Annotation confidence Not enough data

Genome context

chrA7: 22508145-22508351 [-]

Mature bra-miR9555a-5p

• Accession: MIMAT0035663
• Description: Brassica rapa bra-miR9555a-5p mature miRNA
• Sequence: 62 - UUCUAAGCUUUACGGGAAACC - 82
• Evidence: experimental ; Illumina [1]

Mature bra-miR9555a-3p

• Accession: MIMAT0035664
• Description: Brassica rapa bra-miR9555a-3p mature miRNA
• Sequence: 121 - UUUCCCGUAAAGCUUAGAACC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146