Stem-loop bra-MIR9558

Accession

MI0029304

Description

Brassica rapa bra-MIR9558 precursor miRNA

Literature search

1 open access papers mention bra-MIR9558
(2 sentences)

Sequence

caaugcaaacacuguggcaaAGAGAUGUCUGGCUUGCAACAucugaaaugucacuugggugguguagguucagaugugaacauugucacaucuacuguuagagaugUUGCAAGCCAGACAUUUCCUUUcccacaguguucacaguc
...((..((((((((((.(((((((((((((((((((((((((((((....((((.....))))....)))((((((((......))))))))........)))))))))))))))))))))).)))).))))))))))..))...

Structure

caa  ca          c    -                      gaaaugucacuugggugguguagguuc        ac 
   ug  aacacugugg aaAG AGAUGUCUGGCUUGCAACAucu                           agauguga  a
   ||  |||||||||| |||| ||||||||||||||||||||||                           ||||||||   
   ac  uugugacacc UUUC UUUACAGACCGAACGUUguaga                           ucuacacu  u
cug  ac          c    C                      -------------------gauuguca        gu 

Annotation confidence Not enough data

Genome context

chrA3: 16624842-16624987 [-]

Mature bra-miR9558-5p

• Accession: MIMAT0035669
• Description: Brassica rapa bra-miR9558-5p mature miRNA
• Sequence: 21 - AGAGAUGUCUGGCUUGCAACA - 41
• Evidence: experimental ; Illumina [1]

Mature bra-miR9558-3p

• Accession: MIMAT0035670
• Description: Brassica rapa bra-miR9558-3p mature miRNA
• Sequence: 107 - UUGCAAGCCAGACAUUUCCUUU - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146