Stem-loop bra-MIR9560a

Accession

MI0029306

Description

Brassica rapa bra-MIR9560a precursor miRNA

Gene family

MIPF0002116; MIR9560

Literature search

1 open access papers mention bra-MIR9560a
(1 sentences)

Sequence

uuaucuuauuugaagauuaaguguguauugACAGGUGGUGGAACAAAUAUGAGUuuguauaguagucgaacaaaaugaaacUCAUAUUAGUUCUACCUCCUGUUGaagcccacauuaaucugaauaagauuu
..(((((((((..((((((((((.((.((((((((.((((((((.(((((((((((.....((......))......))))))))))).)))))))).)))))))).)).))).))))))))))))))))..

Structure

uu         ga       -   u  a        U        A           -guaua  ag 
  aucuuauuu  agauuaa gug gu uugACAGG GGUGGAAC AAUAUGAGUuu      gu  u
  |||||||||  ||||||| ||| || |||||||| |||||||| |||||||||||      ||   
  uagaauaag  ucuaauu cac cg aGUUGUCC CCAUCUUG UUAUACUcaaa      ca  c
uu         --       a   c  a        U        A           guaaaa  ag 

Annotation confidence Not enough data

Genome context

chrA9: 1983782-1983913 [+]

Mature bra-miR9560a-5p

• Accession: MIMAT0035673
• Description: Brassica rapa bra-miR9560a-5p mature miRNA
• Sequence: 31 - ACAGGUGGUGGAACAAAUAUGAGU - 54
• Evidence: experimental ; Illumina [1]

Mature bra-miR9560a-3p

• Accession: MIMAT0035674
• Description: Brassica rapa bra-miR9560a-3p mature miRNA
• Sequence: 82 - UCAUAUUAGUUCUACCUCCUGUUG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146