Stem-loop bra-MIR9561

Accession

MI0029308

Description

Brassica rapa bra-MIR9561 precursor miRNA

Literature search

1 open access papers mention bra-MIR9561
(1 sentences)

Sequence

aauggccauccgcaucggUGAGUCUCUCACCAGUCUUUCACuaauuguauuaauauucgauuaauuaaauauuaauauaauugguGAGAGACUCUGAAAGACUCACCaaugugaauguucuaa
...((.(((.(((((.(((((((((.(((..((((((((((((((((((((((((((.((....)).)))))))))))))))))))))))))).))).))))))))).))))).))).))...

Structure

aau  c   c     c         C   CC                          c  u 
   gg cau cgcau ggUGAGUCU UCA  AGUCUUUCACuaauuguauuaauauu ga u
   || ||| ||||| ||||||||| |||  |||||||||||||||||||||||||| ||  
   cu gua gugua CCACUCAGA AGU  UCAGAGAGugguuaauauaauuauaa uu a
aau  u   a     a         A   -C                          a  a 

Annotation confidence Not enough data

Genome context

chrA3: 13865321-13865443 [-]

Mature bra-miR9561-5p

• Accession: MIMAT0035677
• Description: Brassica rapa bra-miR9561-5p mature miRNA
• Sequence: 19 - UGAGUCUCUCACCAGUCUUUCAC - 41
• Evidence: experimental ; Illumina [1]

Mature bra-miR9561-3p

• Accession: MIMAT0035678
• Description: Brassica rapa bra-miR9561-3p mature miRNA
• Sequence: 86 - GAGAGACUCUGAAAGACUCACC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146