Stem-loop bra-MIR9555b

Accession

MI0029309

Description

Brassica rapa bra-MIR9555b precursor miRNA

Gene family

MIPF0002081; MIR9555

Sequence

auauuauuggggauuucuugcuccuagauucuuaaaauacauguauguauauguauauauuauauauguauaUGUAAUUGCGGGGUUCUAAGCuuuacgguaagaaacuuucgguuggguuucccauaaaguUUAGAAACUUGCAAUUAUAUAcgcauauauaauauauauauacauacauguauuuuaaaaaccuaagagcaagaaaccccc
........((((.((((((((((.(((.((.(((((((((((((((((((((((((((..(((((((((.((((((((((((((..(((((((((((.((...(((((((......))))))))).)))))))))))..)))))))))))))).)))))))))))))))))))))))))))))))))))).)).))).)))))))))))))).

Structure

auauuauu    a          c   a  c                           au         a              GU           c  uaa       uc 
        gggg uuucuugcuc uag uu uuaaaauacauguauguauauguauau  uauauaugu uaUGUAAUUGCGGG  UCUAAGCuuua gg   gaaacuu  g
        |||| |||||||||| ||| || |||||||||||||||||||||||||||  ||||||||| ||||||||||||||  ||||||||||| ||   |||||||   
        cccc aaagaacgag auc aa aauuuuauguacauacauauauauaua  auauauacg AUAUAUUAACGUUC  AGAUUugaaau cc   cuuuggg  g
-------c    -          a   c  a                           --         c              AA           a  ---       uu 

Annotation confidence Not enough data

Genome context

chrA1: 12276529-12276741 [-]

Mature bra-miR9555b-5p

• Accession: MIMAT0035679
• Description: Brassica rapa bra-miR9555b-5p mature miRNA
• Sequence: 73 - UGUAAUUGCGGGGUUCUAAGC - 93
• Evidence: experimental ; Illumina [1]

Mature bra-miR9555b-3p

• Accession: MIMAT0035680
• Description: Brassica rapa bra-miR9555b-3p mature miRNA
• Sequence: 133 - UUAGAAACUUGCAAUUAUAUA - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146