Stem-loop bra-MIR9565

Accession

MI0029314

Description

Brassica rapa bra-MIR9565 precursor miRNA

Sequence

ccacaucccauaucUCUCGUUCUCUCGUUUCAGCUaauguguauuguuucaucaguuaaugguugaaacuuguuuacaagCUGAAGCUAGUGAAAGAGAGAcgugggauggugguagaauaugcacguauuguuuuuguucguu
(((((((((((.((((((.(((.((.(((((((((..((((.((.(((((((((.....))).))))))..)).))))))))))))).)).))).)))))).))))))).))))..(((((.(((.....)))...)))))...

Structure

------------------------------    -       a      G   U  C         aa    u  -u      -   g 
                              ccac aucccau ucUCUC UUC CU GUUUCAGCU  ugug au  guuuca uca u
                              |||| ||||||| |||||| ||| || |||||||||  |||| ||  |||||| ||| u
                              ggug uagggug AGAGAG AAG GA CGAAGUCga  acau ug  caaagu ggu a
uugcuuguuuuuguuaugcacguauaagau    g       c      A   U  U         --    u  uu      u   a 

Annotation confidence Not enough data

Genome context

chrA9: 3447485-3447628 [-]

Mature bra-miR9565-5p

• Accession: MIMAT0035689
• Description: Brassica rapa bra-miR9565-5p mature miRNA
• Sequence: 15 - UCUCGUUCUCUCGUUUCAGCU - 35
• Evidence: experimental ; Illumina [1]

Mature bra-miR9565-3p

• Accession: MIMAT0035690
• Description: Brassica rapa bra-miR9565-3p mature miRNA
• Sequence: 81 - CUGAAGCUAGUGAAAGAGAGA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146