miRBase entry: cli-mir-193

Stem-loop cli-mir-193

Accession

MI0029998

Description

Columba livia cli-mir-193 precursor miRNA

Sequence

gguuccagaguCGGGGUUUUGGGGGCGAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuuggugguc
....((((((.((((((((((.((((.((.(((((....))).....)).)).)))).)))))))))).)))))).....

Structure

-gguu      u          G    G  A  -----   u 
     ccagag CGGGGUUUUG GGGC AG UG     Agc u
     |||||| |||||||||| |||| || ||     |||  
     gguuuU GCCCUGAAAC CCCG UC Ac     uug a
cuggu      C          A    G  A  cuauu   u

Annotation confidence Not enough data

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Genome context

KB375532.1: 987719-987798 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-193

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-193-5p

Accession	MIMAT0038566
Description	Columba livia cli-miR-193-5p mature miRNA
Sequence	12 - CGGGGUUUUGGGGGCGAGAUGA - 33
Evidence	experimental Illumina [1]

Mature cli-miR-193-3p

Accession	MIMAT0038567
Description	Columba livia cli-miR-193-3p mature miRNA
Sequence	49 - AACUGGCCCACAAAGUCCCGCU - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196