Stem-loop rno-mir-450b-1

Accession

MI0030362

Description

Rattus norvegicus rno-mir-450b-1 precursor miRNA

Sequence

126417 reads, 103 reads per million, 482 experiments

gaacuauUUUUGCGAUGUGUUCCUAAUAuguacuaugaguguAUUGGGGACGCUUCGCAUUCAugguuc
(((((((...(((((.(((((((((((((..(((...)))))))))))))))).)))))...)))))))

Structure

       UUU     U             gu   a 
gaacuau   UGCGA GUGUUCCUAAUAu  acu  
|||||||   ||||| |||||||||||||  ||| u
cuugguA   ACGCU CGCAGGGGUUAug  uga  
       CUU     U             --   g 

Annotation confidence High

Genome context

chrX: 158153254-158153322 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-450b-1

Mature rno-miR-450b-5p

• Accession: MIMAT0035746
• Description: Rattus norvegicus rno-miR-450b-5p mature miRNA
• Sequence: 8 - UUUUGCGAUGUGUUCCUAAUA - 28
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-450b-3p

• Accession: MIMAT0035747
• Description: Rattus norvegicus rno-miR-450b-3p mature miRNA
• Sequence: 43 - AUUGGGGACGCUUCGCAUUCA - 63
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379