Stem-loop bra-MIR156e

Accession

MI0030551

Description

Brassica rapa bra-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156e
(148 sentences)

Sequence

gaaaugcaacagagaaaacUGACAGAAGAGAGUGAGCACuugcaaggcacuguuaugugucaauaacuuugcgugugcgUGCUCACCUCUCUUUCUGUCAGUugccugacuucucgcuu
...........((((((((((((((((((((((((((((.((((..(((..(((((......)))))..))).)))).))))))).))))).))))))))))).......)))))....

Structure

gaaaugcaaca     -------           -     -       u    ag   cu     gu 
           gagaa       aacUGACAGAA GAGAG UGAGCAC ugca  gca  guuau  g
           |||||       ||||||||||| ||||| ||||||| ||||  |||  |||||   
           cucuu       uUGACUGUCUU CUCUC ACUCGUg gugu  cgu  caaua  u
-------uucg     caguccg           U     C       c    -g   uu     ac 

Annotation confidence Not enough data

Genome context

chrA8: 13509380-13509498 [-]

Mature bra-miR156e-5p

• Accession: MIMAT0035824
• Description: Brassica rapa bra-miR156e-5p mature miRNA
• Sequence: 20 - UGACAGAAGAGAGUGAGCAC - 39
• Evidence: experimental ; Illumina [1]

Mature bra-miR156e-3p

• Accession: MIMAT0035825
• Description: Brassica rapa bra-miR156e-3p mature miRNA
• Sequence: 80 - UGCUCACCUCUCUUUCUGUCAGU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146