Stem-loop bra-MIR156g

Accession

MI0030553

Description

Brassica rapa bra-MIR156g precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156g
(148 sentences)

Sequence

cgcaaagaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguucgaugcauuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuccggcuccgauu
.((...(((.(((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).)))..)).......

Structure

------c  aaa   a        -    -         a   ---     cuu     g 
       gc   gaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
       ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
       cg   cuu GACUGUCU UCUC UCACUCGug guu   uucgu   acgua c
uuagccu  -gc   A        A    G         c   cuc     -uu     g 

Annotation confidence Not enough data

Genome context

chrA1: 2836909-2837018 [+]

Mature bra-miR156g-5p

• Accession: MIMAT0035828
• Description: Brassica rapa bra-miR156g-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature bra-miR156g-3p

• Accession: MIMAT0035829
• Description: Brassica rapa bra-miR156g-3p mature miRNA
• Sequence: 75 - GCUCACUGCUCUAUCUGUCAGA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146