Stem-loop bra-MIR168c

Accession

MI0030556

Description

Brassica rapa bra-MIR168c precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

8 open access papers mention bra-MIR168c
(42 sentences)

Sequence

gaaucaccgucgggcucggauUCGCUUGGUGCAGGUCGGGACacaaaucacuggugcuuuugccuuauugguuugugagcagggauuggcuCCCGCCUUGCAUCAACUGAAUcggagccuccaauggugaaac
...(((((((.((((((.((((((.((((((((((.(((((..(((.((.((..(((((..(((.....)))....))))))))))))..))))).)))))))))).)))))).))))))...)))))))...

Structure

gaa       --c      g      C          U     Ca   a  a  gg     --uu   u 
   ucaccgu   gggcuc gauUCG UUGGUGCAGG CGGGA  caa uc cu  ugcuu    gcc u
   |||||||   |||||| |||||| |||||||||| |||||  ||| || ||  |||||    ||| a
   aguggua   uccgag cUAAGU AACUACGUUC GCCCu  guu ag gg  acgag    ugg u
caa       acc      g      C          C     cg   -  -  --     uguu   u 

Annotation confidence Not enough data

Genome context

chrA3: 23668240-23668372 [+]

Mature bra-miR168c-5p

• Accession: MIMAT0035834
• Description: Brassica rapa bra-miR168c-5p mature miRNA
• Sequence: 22 - UCGCUUGGUGCAGGUCGGGAC - 42
• Evidence: experimental ; Illumina [1]

Mature bra-miR168c-3p

• Accession: MIMAT0035835
• Description: Brassica rapa bra-miR168c-3p mature miRNA
• Sequence: 92 - CCCGCCUUGCAUCAACUGAAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146