Stem-loop bra-MIR396

Accession

MI0030565

Description

Brassica rapa bra-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

6 open access papers mention bra-MIR396
(13 sentences)

Sequence

caugaagauccugguuauauuuUUCCACAGCUUUCUUGAACUUucuuuuucauuucccuuauuuuagagccaaaauaacuaaaaaucucuaacauuuaacacucuagaaaaaaaaaaGCUCAAGAAAGCUGUGGGAAAacaugacaauucaggguuuucuuc
...(((((((((((((((.((((((((((((((((((((.((((.((((((.......(((..((((((.................))))))....))).......))))))..)))).)))))))))))))))))))).)))))....))))))))))...

Structure

cau          ----     a                    A    -c      auuuccc   --uu      ccaaaau 
   gaagauccug    guuau uuuUUCCACAGCUUUCUUGA CUUu  uuuuuc       uua    uuagag       a
   ||||||||||    ||||| |||||||||||||||||||| ||||  ||||||       |||    ||||||       a
   cuuuugggac    cagua aAAAGGGUGUCGAAAGAACU Gaaa  aaaaag       aau    aaucuc       c
cuu          uuaa     c                    C    aa      aucucac   uuac      uaaaaau 

Annotation confidence Not enough data

Genome context

chrA8: 8319788-8319949 [-]

Mature bra-miR396-5p

• Accession: MIMAT0035852
• Description: Brassica rapa bra-miR396-5p mature miRNA
• Sequence: 23 - UUCCACAGCUUUCUUGAACUU - 43
• Evidence: experimental ; Illumina [1]

Mature bra-miR396-3p

• Accession: MIMAT0035853
• Description: Brassica rapa bra-miR396-3p mature miRNA
• Sequence: 118 - GCUCAAGAAAGCUGUGGGAAA - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146